GSVIVT01031785001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.OTP51 splicing factor


Gene families : OG_01_0007260 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007260_tree ,
OG_02_0006849 (LandPlants) Phylogenetic Tree(s): OG_02_0006849_tree ,
OG_03_0008359 (SeedPlants) Phylogenetic Tree(s): OG_03_0008359_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031785001
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT2G15820 OTP51 endonucleases 0.03 Archaeplastida
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.05 Archaeplastida
Mp1g08110.1 No alias OTP51 plastidial RNA splicing factor 0.02 Archaeplastida
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
AT2G15820 OTP51 endonucleases 0.03 LandPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.05 LandPlants
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.04 LandPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.03 LandPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.04 LandPlants
AT2G15820 OTP51 endonucleases 0.03 SeedPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.05 SeedPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.04 SeedPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004860 LAGLIDADG_2 580 745
IPR002885 Pentatricopeptide_repeat 345 369
IPR002885 Pentatricopeptide_repeat 383 403
IPR002885 Pentatricopeptide_repeat 481 509
IPR002885 Pentatricopeptide_repeat 517 544
No external refs found!