AT2G37860 (LCD1)

Aliases : LCD1

Description : Protein of unknown function (DUF3411)

Gene families : OG_01_0003340 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003340_tree ,
OG_02_0003438 (LandPlants) Phylogenetic Tree(s): OG_02_0003438_tree ,
OG_03_0003209 (SeedPlants) Phylogenetic Tree(s): OG_03_0003209_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G37860
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AT5G22790	RER1	reticulata-related 1	0.05	Archaeplastida
MA_361488g0010	No alias	Protein RETICULATA, chloroplastic OS=Arabidopsis...	0.04	Archaeplastida
Mp1g12710.1	No alias	Protein RETICULATA-RELATED 1, chloroplastic...	0.02	Archaeplastida
Pp3c2_21600V3.1	No alias	reticulata-related 1	0.05	Archaeplastida
Solyc09g011340.3.1	No alias	Protein RETICULATA, chloroplastic OS=Arabidopsis...	0.05	Archaeplastida
MA_361488g0010	No alias	Protein RETICULATA, chloroplastic OS=Arabidopsis...	0.02	LandPlants
Mp1g12710.1	No alias	Protein RETICULATA-RELATED 1, chloroplastic...	0.02	LandPlants
Pp3c2_21600V3.1	No alias	reticulata-related 1	0.05	LandPlants
Solyc09g011340.3.1	No alias	Protein RETICULATA, chloroplastic OS=Arabidopsis...	0.05	LandPlants
MA_361488g0010	No alias	Protein RETICULATA, chloroplastic OS=Arabidopsis...	0.04	SeedPlants
Solyc09g011340.3.1	No alias	Protein RETICULATA, chloroplastic OS=Arabidopsis...	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	IMP	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009536	plastid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	IMP	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021825	RETICULATA-related	208	347

External Links

No external refs found!