GSVIVT01031165001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG_01_0000046 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000046_tree ,
OG_02_0000020 (LandPlants) Phylogenetic Tree(s): OG_02_0000020_tree ,
OG_03_0003930 (SeedPlants) Phylogenetic Tree(s): OG_03_0003930_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031165001
Cluster HCCA: Cluster_332

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00230630 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.12 Archaeplastida
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.1 Archaeplastida
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.16 Archaeplastida
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.18 Archaeplastida
AT1G11580 ATPMEPCRA, PMEPCRA methylesterase PCR A 0.02 Archaeplastida
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.05 Archaeplastida
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.16 Archaeplastida
AT2G43050 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT2G45220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.14 Archaeplastida
AT3G06830 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.17 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.08 Archaeplastida
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G15980 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.12 Archaeplastida
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.15 Archaeplastida
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 Archaeplastida
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 Archaeplastida
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.03 Archaeplastida
GSVIVT01016667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01018620001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01027356001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01027359001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01037344001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01037352001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.03 Archaeplastida
Gb_15174 No alias pectin methylesterase 0.03 Archaeplastida
Gb_21388 No alias pectin methylesterase 0.05 Archaeplastida
Gb_28387 No alias pectin methylesterase 0.03 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g13320.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g65790.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os03g18860.1 No alias pectin methylesterase 0.11 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.11 Archaeplastida
LOC_Os04g54850.1 No alias pectin methylesterase 0.11 Archaeplastida
LOC_Os05g29790.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g49100.1 No alias pectin methylesterase 0.08 Archaeplastida
LOC_Os08g34900.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os08g34910.1 No alias pectin methylesterase 0.12 Archaeplastida
LOC_Os09g26360.1 No alias pectin methylesterase 0.1 Archaeplastida
LOC_Os11g07090.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os11g08750.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10434127g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_26888g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.06 Archaeplastida
MA_74624g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_84680g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_931259g0010 No alias pectin methylesterase 0.04 Archaeplastida
Mp6g15150.1 No alias pectin methylesterase 0.08 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.06 Archaeplastida
Mp8g09330.1 No alias pectin methylesterase 0.04 Archaeplastida
Pp3c10_1100V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.06 Archaeplastida
Pp3c18_170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
Pp3c21_22110V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 Archaeplastida
Pp3c2_35260V3.1 No alias pectin methylesterase 3 0.02 Archaeplastida
Pp3c3_36450V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c4_22420V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 Archaeplastida
Pp3c8_3840V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Smo114014 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Smo83744 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc01g057220.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066360.3.1 No alias pectin methylesterase 0.13 Archaeplastida
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.15 Archaeplastida
Solyc01g066420.3.1 No alias pectin methylesterase 0.15 Archaeplastida
Solyc01g099940.3.1 No alias pectin methylesterase 0.14 Archaeplastida
Solyc01g099960.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g078090.4.1 No alias pectin methylesterase 0.14 Archaeplastida
Solyc03g078100.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g083840.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc05g054360.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc06g034360.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g017560.4.1 No alias pectin methylesterase 0.15 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc09g075330.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc09g075350.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc12g099410.2.1 No alias pectin methylesterase 0.16 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.12 Archaeplastida
Zm00001e006791_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e007917_P002 No alias pectin methylesterase 0.09 Archaeplastida
Zm00001e008055_P001 No alias pectin methylesterase 0.01 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.11 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.1 Archaeplastida
Zm00001e035932_P003 No alias pectin methylesterase 0.1 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.12 Archaeplastida
Zm00001e041757_P001 No alias pectin methylesterase 0.06 Archaeplastida
AMTR_s00002p00230630 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 LandPlants
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.09 LandPlants
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.09 LandPlants
AMTR_s00038p00046180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 LandPlants
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.13 LandPlants
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.16 LandPlants
AT1G11580 ATPMEPCRA, PMEPCRA methylesterase PCR A 0.02 LandPlants
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.12 LandPlants
AT2G45220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 LandPlants
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.12 LandPlants
AT3G06830 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.13 LandPlants
AT3G10710 RHS12 root hair specific 12 0.05 LandPlants
AT4G15980 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.09 LandPlants
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.13 LandPlants
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 LandPlants
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 LandPlants
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 LandPlants
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.02 LandPlants
GSVIVT01018620001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 LandPlants
GSVIVT01018622001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 LandPlants
Gb_15174 No alias pectin methylesterase 0.02 LandPlants
Gb_21388 No alias pectin methylesterase 0.04 LandPlants
LOC_Os03g18860.1 No alias pectin methylesterase 0.08 LandPlants
LOC_Os04g38560.1 No alias pectin methylesterase 0.1 LandPlants
LOC_Os07g49100.1 No alias pectin methylesterase 0.06 LandPlants
LOC_Os08g34910.1 No alias pectin methylesterase 0.1 LandPlants
LOC_Os09g26360.1 No alias pectin methylesterase 0.08 LandPlants
LOC_Os11g08750.1 No alias pectin methylesterase 0.02 LandPlants
LOC_Os11g36240.1 No alias pectin methylesterase 0.02 LandPlants
MA_26888g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_648837g0010 No alias pectin methylesterase 0.03 LandPlants
MA_931259g0010 No alias pectin methylesterase 0.02 LandPlants
Mp8g00060.1 No alias pectin methylesterase 0.03 LandPlants
Mp8g09330.1 No alias pectin methylesterase 0.01 LandPlants
Pp3c18_170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 LandPlants
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 LandPlants
Pp3c4_22420V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 LandPlants
Solyc01g066360.3.1 No alias pectin methylesterase 0.08 LandPlants
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.11 LandPlants
Solyc01g066420.3.1 No alias pectin methylesterase 0.13 LandPlants
Solyc01g099960.4.1 No alias pectin methylesterase 0.02 LandPlants
Solyc02g014300.2.1 No alias pectin methylesterase 0.02 LandPlants
Solyc03g083840.3.1 No alias pectin methylesterase 0.02 LandPlants
Solyc03g083870.4.1 No alias pectin methylesterase 0.03 LandPlants
Solyc05g054360.4.1 No alias pectin methylesterase 0.04 LandPlants
Solyc06g034360.2.1 No alias pectin methylesterase 0.02 LandPlants
Solyc07g017560.4.1 No alias pectin methylesterase 0.13 LandPlants
Solyc07g017600.3.1 No alias pectin methylesterase 0.02 LandPlants
Solyc09g075330.4.1 No alias pectin methylesterase 0.02 LandPlants
Solyc12g099410.2.1 No alias pectin methylesterase 0.13 LandPlants
Zm00001e004056_P002 No alias no hits & (original description: none) 0.1 LandPlants
Zm00001e007917_P002 No alias pectin methylesterase 0.07 LandPlants
Zm00001e009863_P001 No alias pectin methylesterase 0.06 LandPlants
Zm00001e017514_P001 No alias pectin methylesterase 0.02 LandPlants
Zm00001e034231_P001 No alias pectin methylesterase 0.06 LandPlants
Zm00001e035932_P003 No alias pectin methylesterase 0.08 LandPlants
Zm00001e041006_P001 No alias pectin methylesterase 0.09 LandPlants
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.1 SeedPlants
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.12 SeedPlants
AT3G06830 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.14 SeedPlants
AT4G15980 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.09 SeedPlants
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.07 SeedPlants
LOC_Os03g18860.1 No alias pectin methylesterase 0.1 SeedPlants
LOC_Os07g49100.1 No alias pectin methylesterase 0.06 SeedPlants
Solyc01g066360.3.1 No alias pectin methylesterase 0.07 SeedPlants
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.09 SeedPlants
Solyc01g066420.3.1 No alias pectin methylesterase 0.11 SeedPlants
Solyc05g054360.4.1 No alias pectin methylesterase 0.04 SeedPlants
Solyc12g099410.2.1 No alias pectin methylesterase 0.12 SeedPlants
Zm00001e035932_P003 No alias pectin methylesterase 0.1 SeedPlants

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 58 206
IPR000070 Pectinesterase_cat 264 560
No external refs found!