AT2G37220

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_01_0000043 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000043_tree ,
OG_02_0000810 (LandPlants) Phylogenetic Tree(s): OG_02_0000810_tree ,
OG_03_0004328 (SeedPlants) Phylogenetic Tree(s): OG_03_0004328_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G37220
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00202090	evm_27.TU.AmTr_v1...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00061p00032260	evm_27.TU.AmTr_v1...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana	0.09	Archaeplastida
AMTR_s00061p00142700	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00148p00072380	evm_27.TU.AmTr_v1...	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.05	Archaeplastida
AMTR_s00166p00060690	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.07	Archaeplastida
GSVIVT01007596001	No alias	RNA processing.organelle machineries.RNA...	0.1	Archaeplastida
GSVIVT01025697001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.14	Archaeplastida
GSVIVT01027917001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.04	Archaeplastida
GSVIVT01032361001	No alias	RNA processing.organelle machineries.RNA...	0.12	Archaeplastida
Gb_05747	No alias	component psPSRP2 of small ribosomal subunit proteome	0.04	Archaeplastida
Gb_09687	No alias	Organelle RRM domain-containing protein 6, chloroplastic...	0.03	Archaeplastida
Gb_29798	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.1	Archaeplastida
Gb_32176	No alias	component psPSRP2 of small ribosomal subunit proteome	0.03	Archaeplastida
Gb_37522	No alias	Organelle RRM domain-containing protein 1, chloroplastic...	0.08	Archaeplastida
LOC_Os02g57010.1	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.08	Archaeplastida
LOC_Os03g25960.1	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.12	Archaeplastida
LOC_Os07g06450.1	No alias	RNA-binding protein CP33, chloroplastic OS=Arabidopsis...	0.09	Archaeplastida
LOC_Os07g43810.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.03	Archaeplastida
LOC_Os08g44290.1	No alias	RNA editing factor (CP31)	0.09	Archaeplastida
LOC_Os09g39180.1	No alias	RNA editing factor (CP31)	0.07	Archaeplastida
MA_10434075g0010	No alias	component psPSRP2 of small ribosomal subunit proteome	0.05	Archaeplastida
MA_185349g0010	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.03	Archaeplastida
MA_320479g0010	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.08	Archaeplastida
MA_367032g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_474396g0010	No alias	RNA editing factor (CP31)	0.06	Archaeplastida
MA_7844926g0010	No alias	Organelle RRM domain-containing protein 1, chloroplastic...	0.03	Archaeplastida
Mp2g13800.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.12	Archaeplastida
Mp3g24820.1	No alias	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis...	0.05	Archaeplastida
Mp8g03420.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	Archaeplastida
Pp3c12_9890V3.1	No alias	chloroplast RNA-binding protein 29	0.05	Archaeplastida
Pp3c8_16740V3.1	No alias	chloroplast RNA-binding protein 29	0.08	Archaeplastida
Solyc01g006940.4.1	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.09	Archaeplastida
Solyc03g111840.3.1	No alias	RNA editing factor (CP31)	0.11	Archaeplastida
Solyc09g007850.3.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.1	Archaeplastida
Solyc09g011210.4.1	No alias	Organelle RRM domain-containing protein 6, chloroplastic...	0.03	Archaeplastida
Solyc09g090960.4.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.04	Archaeplastida
Solyc10g086150.2.1	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.07	Archaeplastida
Zm00001e001824_P002	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.12	Archaeplastida
Zm00001e003947_P001	No alias	RNA editing factor (CP31)	0.12	Archaeplastida
Zm00001e010844_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.07	Archaeplastida
Zm00001e011440_P001	No alias	RNA chaperone (RZ1\|GR-RBP)	0.02	Archaeplastida
Zm00001e016211_P001	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.05	Archaeplastida
Zm00001e022086_P002	No alias	RNA editing factor (CP31)	0.19	Archaeplastida
Zm00001e032835_P001	No alias	RNA-binding protein CP33, chloroplastic OS=Arabidopsis...	0.14	Archaeplastida
Zm00001e033465_P001	No alias	RNA editing factor (CP31)	0.14	Archaeplastida
Zm00001e035630_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.11	Archaeplastida
AMTR_s00061p00142700	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.02	LandPlants
AMTR_s00148p00072380	evm_27.TU.AmTr_v1...	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.05	LandPlants
AMTR_s00166p00060690	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.07	LandPlants
GSVIVT01007596001	No alias	RNA processing.organelle machineries.RNA...	0.1	LandPlants
GSVIVT01025697001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.14	LandPlants
GSVIVT01027917001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.04	LandPlants
GSVIVT01032361001	No alias	RNA processing.organelle machineries.RNA...	0.11	LandPlants
Gb_29798	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.09	LandPlants
Gb_32176	No alias	component psPSRP2 of small ribosomal subunit proteome	0.03	LandPlants
LOC_Os02g57010.1	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.09	LandPlants
LOC_Os03g25960.1	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.12	LandPlants
LOC_Os08g44290.1	No alias	RNA editing factor (CP31)	0.09	LandPlants
LOC_Os09g39180.1	No alias	RNA editing factor (CP31)	0.07	LandPlants
MA_185349g0010	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.02	LandPlants
MA_320479g0010	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.07	LandPlants
MA_474396g0010	No alias	RNA editing factor (CP31)	0.06	LandPlants
Mp2g13800.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.12	LandPlants
Mp3g24820.1	No alias	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis...	0.05	LandPlants
Mp8g03420.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	LandPlants
Pp3c12_9890V3.1	No alias	chloroplast RNA-binding protein 29	0.05	LandPlants
Solyc03g111840.3.1	No alias	RNA editing factor (CP31)	0.12	LandPlants
Solyc09g007850.3.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.1	LandPlants
Solyc09g090960.4.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.04	LandPlants
Solyc10g086150.2.1	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.07	LandPlants
Zm00001e001824_P002	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.11	LandPlants
Zm00001e003947_P001	No alias	RNA editing factor (CP31)	0.12	LandPlants
Zm00001e010844_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.06	LandPlants
Zm00001e016211_P001	No alias	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.04	LandPlants
Zm00001e022086_P002	No alias	RNA editing factor (CP31)	0.19	LandPlants
Zm00001e033465_P001	No alias	RNA editing factor (CP31)	0.15	LandPlants
Zm00001e035630_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.1	LandPlants
AMTR_s00148p00072380	evm_27.TU.AmTr_v1...	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.05	SeedPlants
GSVIVT01025697001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.14	SeedPlants
Gb_29798	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.08	SeedPlants
LOC_Os03g25960.1	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.12	SeedPlants
MA_320479g0010	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.09	SeedPlants
Solyc09g007850.3.1	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.1	SeedPlants
Solyc10g086150.2.1	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.08	SeedPlants
Zm00001e001824_P002	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.12	SeedPlants
Zm00001e010844_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.07	SeedPlants
Zm00001e035630_P001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.11	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008187	poly-pyrimidine tract binding	None	Extended
MF	GO:0008266	poly(U) RNA binding	IDA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009409	response to cold	RCA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0010319	stromule	IDA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042742	defense response to bacterium	RCA	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	IDA	Interproscan
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	93	163
IPR000504	RRM_dom	206	276

External Links

No external refs found!

AT2G37220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation