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  5. GSVIVT01029701001

GSVIVT01029701001


Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029701001
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.05 Archaeplastida
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.03 Archaeplastida
AT1G53320 AtTLP7, TLP7 tubby like protein 7 0.02 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.06 Archaeplastida
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.05 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.05 Archaeplastida
Pp3c23_17770V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Pp3c24_19540V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Pp3c8_18450V3.1 No alias tubby like protein 3 0.04 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.08 Archaeplastida
Solyc04g071750.4.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Solyc07g062390.4.1 No alias transcription factor (TUB) 0.04 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.08 Archaeplastida
Zm00001e019166_P001 No alias transcription factor (TUB) 0.06 Archaeplastida
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.04 LandPlants
AT1G53320 AtTLP7, TLP7 tubby like protein 7 0.02 LandPlants
Gb_22686 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.03 LandPlants
Pp3c24_19540V3.1 No alias tubby like protein 3 0.02 LandPlants
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
Solyc01g067680.3.1 No alias transcription factor (TUB) 0.02 LandPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.06 LandPlants
Solyc03g033980.4.1 No alias transcription factor (TUB) 0.02 LandPlants
Solyc07g062390.4.1 No alias transcription factor (TUB) 0.04 LandPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.06 LandPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.04 LandPlants
Zm00001e024653_P002 No alias transcription factor (TUB) 0.02 LandPlants
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.02 SeedPlants
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.03 SeedPlants
MA_132704g0010 No alias transcription factor (TUB) 0.02 SeedPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.02 SeedPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.05 SeedPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.04 SeedPlants
Zm00001e024653_P002 No alias transcription factor (TUB) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000007 Tubby_C 116 254
IPR000007 Tubby_C 261 304
IPR001810 F-box_dom 52 105
No external refs found!