AT2G34400


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000000 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0012214 (SeedPlants) Phylogenetic Tree(s): OG_03_0012214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G34400
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
AT5G52630 MEF1 mitochondrial RNAediting factor 1 0.02 Archaeplastida
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01019231001 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
GSVIVT01026141001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
LOC_Os05g33920.1 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.03 Archaeplastida
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00032p00176600 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
AT3G12770 MEF22 mitochondrial editing factor 22 0.03 LandPlants
AT5G52630 MEF1 mitochondrial RNAediting factor 1 0.02 LandPlants
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
GSVIVT01012938001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 LandPlants
GSVIVT01016833001 No alias No description available 0.02 LandPlants
GSVIVT01019231001 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 LandPlants
LOC_Os01g46230.1 No alias RNA editing factor (MEF1) 0.03 LandPlants
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
LOC_Os12g15460.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 LandPlants
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 LandPlants
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 LandPlants
Smo82255 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 LandPlants
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 LandPlants
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 LandPlants
Solyc02g088650.1.1 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 LandPlants
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.02 LandPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 297 344
IPR002885 Pentatricopeptide_repeat 197 244
IPR002885 Pentatricopeptide_repeat 398 443
IPR002885 Pentatricopeptide_repeat 94 144
IPR002885 Pentatricopeptide_repeat 172 196
IPR002885 Pentatricopeptide_repeat 373 397
IPR002885 Pentatricopeptide_repeat 470 493
No external refs found!