Cre12.g529600


Description : 27.2 RNA.transcription Encodes a subunit of RNA polymerase I (aka RNA polymerase A). nuclear RNA polymerase A1 (NRPA1)


Gene families : OG_01_0007038 (Gene family) Phylogenetic Tree(s): OG0007038_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cre12.g529600
Cluster HCCA cluster: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT3G57660 NRPA1 nuclear RNA polymerase A1 0.16 Gene family
Cpa|evm.model.tig00000203.25 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.05 Gene family
GSVIVT01033327001 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.08 Gene family
LOC_Os06g40950 Os06g0612200 27.2 RNA.transcription Encodes a subunit of RNA... 0.04 Gene family
MA_533482g0010 No alias 27.2 RNA.transcription Encodes a subunit of RNA... 0.01 Gene family
Solyc10g080350.2.1 Solyc10g080350.2 27.2 RNA.transcription Encodes a subunit of RNA... 0.23 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 12 234
IPR007083 RNA_pol_Rpb1_4 1088 1163
IPR007081 RNA_pol_Rpb1_5 1170 1850
IPR007066 RNA_pol_Rpb1_3 788 988
IPR000722 RNA_pol_asu 578 783
No external refs found!