Description : Transcription elongation factor Spt5

Gene families : OG_01_0001535 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001535_tree ,
OG_02_0002332 (LandPlants) Phylogenetic Tree(s): OG_02_0002332_tree ,
OG_03_0003310 (SeedPlants) Phylogenetic Tree(s): OG_03_0003310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AT2G34210
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g53230.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 Archaeplastida
AMTR_s03307p00006510 evm_27.TU.AmTr_v1... Putative transcription elongation factor SPT5 homolog 1... 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006352 DNA-templated transcription, initiation ISS Interproscan
BP GO:0006366 transcription by RNA polymerase II RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022581 Spt5_N 62 164
IPR005100 NGN-domain 170 252
IPR005824 KOW 467 492
IPR005824 KOW 686 717
No external refs found!