GSVIVT01025541001


Description : Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0006806 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006806_tree ,
OG_02_0007343 (LandPlants) Phylogenetic Tree(s): OG_02_0007343_tree ,
OG_03_0007467 (SeedPlants) Phylogenetic Tree(s): OG_03_0007467_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025541001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00232870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02830,... 0.05 Archaeplastida
AT5G02830 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.06 Archaeplastida
Pp3c22_3070V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.12 Archaeplastida
Zm00001e038437_P002 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.07 Archaeplastida
AMTR_s00023p00232870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02830,... 0.05 LandPlants
AT5G02830 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 LandPlants
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.06 LandPlants
Pp3c22_3070V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.1 LandPlants
Zm00001e038437_P002 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.07 LandPlants
AMTR_s00023p00232870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02830,... 0.05 SeedPlants
AT5G02830 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 SeedPlants
Gb_13517 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.01 SeedPlants
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.04 SeedPlants
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.09 SeedPlants
Zm00001e038437_P002 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 385 432
IPR033443 PPR_long 219 337
IPR002885 Pentatricopeptide_repeat 555 613
IPR002885 Pentatricopeptide_repeat 353 383
No external refs found!