GSVIVT01025159001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0002431 (SeedPlants) Phylogenetic Tree(s): OG_03_0002431_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025159001
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Gb_32404 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os10g33940.1 No alias transcription factor (ARF) 0.05 Archaeplastida
MA_10432528g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_122218g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Solyc02g077560.3.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc09g007810.4.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc11g069500.2.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e004554_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e012670_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e013061_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041866_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.04 LandPlants
Gb_32404 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 LandPlants
MA_10432580g0010 No alias transcription factor (ARF) 0.03 LandPlants
MA_40335g0010 No alias transcription factor (ARF) 0.02 LandPlants
Solyc02g077560.3.1 No alias transcription factor (ARF) 0.05 LandPlants
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.02 LandPlants
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e032423_P002 No alias transcription factor (ARF) 0.04 LandPlants
Gb_32404 No alias transcription factor (ARF) 0.02 SeedPlants
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.02 SeedPlants
Solyc02g077560.3.1 No alias transcription factor (ARF) 0.05 SeedPlants
Zm00001e020205_P004 No alias transcription factor (ARF) 0.02 SeedPlants
Zm00001e032423_P002 No alias transcription factor (ARF) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 167 268
IPR010525 Auxin_resp 293 374
No external refs found!