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  5. GSVIVT01024351001

GSVIVT01024351001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor


Gene families : OG_01_0003962 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003962_tree ,
OG_02_0005807 (LandPlants) Phylogenetic Tree(s): OG_02_0005807_tree ,
OG_03_0006787 (SeedPlants) Phylogenetic Tree(s): OG_03_0006787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024351001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.17 Archaeplastida
Cpa|evm.model.tig00000704.61 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Cpa|evm.model.tig00000704.62 No alias No description available 0.02 Archaeplastida
Cre07.g344050 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.06 Archaeplastida
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.12 Archaeplastida
MA_566936g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.07 Archaeplastida
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.14 Archaeplastida
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.15 Archaeplastida
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.03 Archaeplastida
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.08 Archaeplastida
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 LandPlants
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.15 LandPlants
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.04 LandPlants
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.13 LandPlants
MA_566936g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.05 LandPlants
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.13 LandPlants
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 LandPlants
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.13 LandPlants
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.03 LandPlants
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.07 LandPlants
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 SeedPlants
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.15 SeedPlants
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.04 SeedPlants
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.13 SeedPlants
MA_10426255g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_566936g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.13 SeedPlants
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.03 SeedPlants
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013934 SSU_processome_Utp13 661 794
IPR001680 WD40_repeat 522 554
IPR001680 WD40_repeat 135 174
IPR001680 WD40_repeat 423 461
IPR001680 WD40_repeat 602 638
IPR001680 WD40_repeat 559 596
IPR001680 WD40_repeat 482 512
IPR001680 WD40_repeat 93 130
IPR001680 WD40_repeat 58 87
IPR001680 WD40_repeat 378 417
No external refs found!