GSVIVT01023149001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0003855 (SeedPlants) Phylogenetic Tree(s): OG_03_0003855_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023149001
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020904.93 No alias No description available 0.02 Archaeplastida
GSVIVT01016266001 No alias Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
GSVIVT01025198001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Gb_31132 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
MA_122218g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c4_12970V3.1 No alias auxin response factor 16 0.04 Archaeplastida
Pp3c4_13010V3.1 No alias auxin response factor 16 0.02 Archaeplastida
Smo424114 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc05g056040.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e039552_P004 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e041866_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
AMTR_s00021p00221770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.03 LandPlants
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.05 LandPlants
MA_10432580g0010 No alias transcription factor (ARF) 0.04 LandPlants
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e032423_P002 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e039552_P004 No alias transcription factor (ARF) 0.03 LandPlants
AT3G61830 ARF18 auxin response factor 18 0.02 SeedPlants
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 228
IPR010525 Auxin_resp 254 337
IPR033389 AUX/IAA_dom 550 643
No external refs found!