GSVIVT01022204001


Description : Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0007143 (LandPlants) Phylogenetic Tree(s): OG_02_0007143_tree ,
OG_03_0009674 (SeedPlants) Phylogenetic Tree(s): OG_03_0009674_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022204001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00075400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.07 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.06 Archaeplastida
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.07 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.06 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.05 LandPlants
Mp8g16070.1 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.02 LandPlants
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.06 LandPlants
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.04 LandPlants
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.05 SeedPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.06 SeedPlants
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 360
IPR002885 Pentatricopeptide_repeat 136 165
IPR002885 Pentatricopeptide_repeat 386 412
IPR002885 Pentatricopeptide_repeat 242 289
IPR002885 Pentatricopeptide_repeat 167 220
No external refs found!