GSVIVT01020814001


Description : External stimuli response.light.red/far red light.PIF transcriptional regulator


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020814001
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00146370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00110p00030150 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.05 Archaeplastida
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.05 Archaeplastida
AT4G00050 UNE10 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G67110 ALC basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
LOC_Os03g56950.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
LOC_Os06g47980.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.08 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp3g17350.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.06 Archaeplastida
Smo39143 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.06 Archaeplastida
Solyc11g005780.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e002331_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.07 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
AMTR_s00021p00146370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
AMTR_s00110p00030150 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.02 LandPlants
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.04 LandPlants
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.04 LandPlants
AT4G00050 UNE10 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 LandPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
AT5G67110 ALC basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
LOC_Os06g47980.1 No alias no hits & (original description: none) 0.02 LandPlants
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.07 LandPlants
MA_29186g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_306658g0010 No alias transcription factor (bHLH) 0.02 LandPlants
Mp3g17350.1 No alias transcription factor (bHLH) 0.03 LandPlants
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.04 LandPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.06 LandPlants
Solyc11g005780.3.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.05 LandPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 LandPlants
AMTR_s00021p00146370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 SeedPlants
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.02 SeedPlants
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.04 SeedPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 SeedPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 SeedPlants
LOC_Os12g32400.1 No alias transcription factor (bHLH) 0.02 SeedPlants
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.07 SeedPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 SeedPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.06 SeedPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 342 388
No external refs found!