GSVIVT01020809001


Description : Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana


Gene families : OG_01_0008036 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008036_tree ,
OG_02_0007862 (LandPlants) Phylogenetic Tree(s): OG_02_0007862_tree ,
OG_03_0010058 (SeedPlants) Phylogenetic Tree(s): OG_03_0010058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020809001
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.04 Archaeplastida
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.15 Archaeplastida
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.14 Archaeplastida
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.04 Archaeplastida
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.12 Archaeplastida
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 Archaeplastida
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.04 Archaeplastida
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.19 Archaeplastida
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.04 LandPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.15 LandPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.13 LandPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.05 LandPlants
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.12 LandPlants
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.15 LandPlants
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.02 LandPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.18 LandPlants
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 SeedPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.15 SeedPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.14 SeedPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.04 SeedPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.18 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 313 361
IPR002885 Pentatricopeptide_repeat 454 498
IPR002885 Pentatricopeptide_repeat 383 432
IPR002885 Pentatricopeptide_repeat 141 187
IPR002885 Pentatricopeptide_repeat 244 291
No external refs found!