GSVIVT01018993001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor complex.large subunit


Gene families : OG_01_0000654 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000654_tree ,
OG_02_0001447 (LandPlants) Phylogenetic Tree(s): OG_02_0001447_tree ,
OG_03_0002423 (SeedPlants) Phylogenetic Tree(s): OG_03_0002423_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018993001
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AT1G60900 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.04 Archaeplastida
Cpa|evm.model.tig00021464.4 No alias No description available 0.01 Archaeplastida
Cre09.g391949 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
Gb_01578 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
MA_8424039g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g062920.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Solyc02g085570.4.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Solyc12g008750.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Zm00001e021119_P005 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Zm00001e038951_P001 No alias Splicing factor U2af large subunit A OS=Nicotiana... 0.04 Archaeplastida
AT1G60900 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.04 LandPlants
Gb_01578 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 LandPlants
MA_8424039g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 LandPlants
Mp6g18910.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.01 LandPlants
Solyc02g062920.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 LandPlants
Solyc02g085570.4.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 LandPlants
Solyc12g008750.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 LandPlants
Zm00001e021119_P005 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 LandPlants
AT1G60900 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.03 SeedPlants
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 SeedPlants
Gb_01578 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 SeedPlants
LOC_Os11g45590.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 SeedPlants
MA_8424039g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc02g062920.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 SeedPlants
Solyc02g085570.4.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 SeedPlants
Solyc12g008750.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 SeedPlants
Zm00001e021000_P006 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.01 SeedPlants
Zm00001e021119_P005 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 181 250
No external refs found!