GSVIVT01017921001


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0001935 (LandPlants) Phylogenetic Tree(s): OG_02_0001935_tree ,
OG_03_0002288 (SeedPlants) Phylogenetic Tree(s): OG_03_0002288_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017921001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.05 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000545.10 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000802.67 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
LOC_Os02g02290.1 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
Mp1g07380.1 No alias CHD3-type chromatin-remodeling factor CHR7... 0.04 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.04 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.05 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.02 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.04 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.05 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 LandPlants
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 LandPlants
AT3G06010 ATCHR12 Homeotic gene regulator 0.02 LandPlants
AT5G19310 No alias Homeotic gene regulator 0.02 LandPlants
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.03 LandPlants
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.07 LandPlants
MA_23378g0020 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 LandPlants
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 LandPlants
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.03 LandPlants
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 LandPlants
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 LandPlants
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.07 LandPlants
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.04 LandPlants
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 SeedPlants
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 SeedPlants
AT5G19310 No alias Homeotic gene regulator 0.02 SeedPlants
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.03 SeedPlants
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.07 SeedPlants
MA_23378g0020 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 SeedPlants
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 SeedPlants
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 SeedPlants
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.07 SeedPlants
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0042393 histone binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 711 824
IPR000330 SNF2_dom 415 691
IPR029295 SnAC 904 981
No external refs found!