GSVIVT01017379001

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1)

Gene families : OG_01_0003806 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003806_tree ,
OG_02_0004351 (LandPlants) Phylogenetic Tree(s): OG_02_0004351_tree ,
OG_03_0004745 (SeedPlants) Phylogenetic Tree(s): OG_03_0004745_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01017379001
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os08g21330.1	No alias	formamidopyrimidine-DNA glycosylase (FPG1)	0.02	Archaeplastida
Pp3c23_21520V3.1	No alias	MUTM homolog-1	0.02	Archaeplastida
Pp3c24_20180V3.1	No alias	MUTM homolog-1	0.03	Archaeplastida
Pp3c8_24280V3.1	No alias	MUTM homolog-1	0.02	Archaeplastida
Smo75016	No alias	DNA damage response.DNA repair mechanisms.base excision...	0.03	Archaeplastida
Solyc03g117510.4.1	No alias	formamidopyrimidine-DNA glycosylase (FPG1)	0.03	Archaeplastida
Pp3c23_21520V3.1	No alias	MUTM homolog-1	0.02	LandPlants
Pp3c24_20180V3.1	No alias	MUTM homolog-1	0.03	LandPlants
Smo75016	No alias	DNA damage response.DNA repair mechanisms.base excision...	0.03	LandPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEA	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012319	FPG_cat	1	131
IPR015886	DNA_glyclase/AP_lyase_DNA-bd	146	233

External Links

No external refs found!

GSVIVT01017379001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation