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  5. GSVIVT01017243001

GSVIVT01017243001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.PWP2/UTP1 assembly factor


Gene families : OG_01_0005597 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005597_tree ,
OG_02_0007728 (LandPlants) Phylogenetic Tree(s): OG_02_0007728_tree ,
OG_03_0009679 (SeedPlants) Phylogenetic Tree(s): OG_03_0009679_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017243001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00059990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.18 Archaeplastida
Cpa|evm.model.tig00000076.89 No alias Periodic tryptophan protein 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre06.g254150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
Gb_23048 No alias SSU processome assembly factor (UTP1/PWP2) 0.1 Archaeplastida
LOC_Os05g44320.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.16 Archaeplastida
MA_138254g0010 No alias Periodic tryptophan protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_917430g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.17 Archaeplastida
Pp3c7_9990V3.1 No alias periodic tryptophan protein 2 0.1 Archaeplastida
Smo80929 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Solyc03g120080.4.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.19 Archaeplastida
AMTR_s00056p00059990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 LandPlants
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.14 LandPlants
Gb_23048 No alias SSU processome assembly factor (UTP1/PWP2) 0.09 LandPlants
LOC_Os05g44320.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.14 LandPlants
MA_917430g0010 No alias no hits & (original description: none) 0.06 LandPlants
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.14 LandPlants
Pp3c7_9990V3.1 No alias periodic tryptophan protein 2 0.08 LandPlants
Smo80929 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 LandPlants
Solyc03g120080.4.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.17 LandPlants
AMTR_s00056p00059990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 SeedPlants
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.14 SeedPlants
Gb_23048 No alias SSU processome assembly factor (UTP1/PWP2) 0.09 SeedPlants
LOC_Os05g44320.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.14 SeedPlants
MA_917430g0010 No alias no hits & (original description: none) 0.06 SeedPlants
Solyc03g120080.4.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.16 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 424 461
IPR001680 WD40_repeat 339 375
IPR001680 WD40_repeat 134 167
IPR001680 WD40_repeat 475 503
IPR001680 WD40_repeat 302 332
IPR007148 SSU_processome_Utp12 706 811
No external refs found!