GSVIVT01014050001


Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0007364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007364_tree ,
OG_02_0005355 (LandPlants) Phylogenetic Tree(s): OG_02_0005355_tree ,
OG_03_0010911 (SeedPlants) Phylogenetic Tree(s): OG_03_0010911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014050001
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
MA_173517g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.06 Archaeplastida
Pp3c5_2530V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
MA_173517g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.06 LandPlants
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 SeedPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 SeedPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 662 705
IPR002885 Pentatricopeptide_repeat 210 250
IPR002885 Pentatricopeptide_repeat 345 391
IPR002885 Pentatricopeptide_repeat 766 807
IPR002885 Pentatricopeptide_repeat 832 880
IPR002885 Pentatricopeptide_repeat 279 306
IPR002885 Pentatricopeptide_repeat 730 760
IPR002885 Pentatricopeptide_repeat 558 583
IPR002885 Pentatricopeptide_repeat 488 511
IPR002885 Pentatricopeptide_repeat 174 199
IPR002885 Pentatricopeptide_repeat 591 617
IPR002885 Pentatricopeptide_repeat 524 549
IPR002885 Pentatricopeptide_repeat 315 343
No external refs found!