GSVIVT01012110001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0000013 (SeedPlants) Phylogenetic Tree(s): OG_03_0000013_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012110001
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00001p00270400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00066p00109320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT1G17310 No alias MADS-box transcription factor family protein 0.03 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.04 Archaeplastida
AT2G22630 AGL17 AGAMOUS-like 17 0.04 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.07 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.02 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.04 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.05 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.02 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT5G51870 AGL71 AGAMOUS-like 71 0.03 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01008140001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.08 Archaeplastida
GSVIVT01021534001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_12581 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g11970.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.05 Archaeplastida
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os08g38590.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os09g02780.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os12g21850.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10432602g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.04 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 Archaeplastida
MA_57493g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.04 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.03 Archaeplastida
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c17_24040V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.03 Archaeplastida
Pp3c3_31770V3.1 No alias AGAMOUS-like 104 0.02 Archaeplastida
Pp3c8_6920V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.04 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.07 Archaeplastida
Solyc01g106720.1.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc02g084630.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.05 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.03 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e030187_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.02 LandPlants
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.02 LandPlants
AT2G22630 AGL17 AGAMOUS-like 17 0.03 LandPlants
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.04 LandPlants
AT2G45650 AGL6 AGAMOUS-like 6 0.02 LandPlants
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 LandPlants
AT3G30260 AGL79 AGAMOUS-like 79 0.03 LandPlants
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT4G11880 AGL14 AGAMOUS-like 14 0.03 LandPlants
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.02 LandPlants
AT5G51870 AGL71 AGAMOUS-like 71 0.02 LandPlants
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
Gb_12581 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Gb_16301 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 LandPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 LandPlants
LOC_Os01g74440.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os02g45770.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os05g34940.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os06g11970.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.01 LandPlants
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 LandPlants
MA_57493g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.02 LandPlants
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 LandPlants
Solyc01g106720.1.1 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.04 LandPlants
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.03 LandPlants
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 SeedPlants
AT4G11880 AGL14 AGAMOUS-like 14 0.02 SeedPlants
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.02 SeedPlants
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 SeedPlants
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 SeedPlants
Gb_30604 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
Gb_38920 No alias no hits & (original description: none) 0.01 SeedPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
LOC_Os05g34940.1 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
LOC_Os06g11970.1 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
MA_18942g0010 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 SeedPlants
MA_57493g0010 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 SeedPlants
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002487 TF_Kbox 88 173
IPR002100 TF_MADSbox 10 57
No external refs found!