AT2G24790 (COL3, ATCOL3)

Aliases : COL3, ATCOL3

Description : CONSTANS-like 3

Gene families : OG_01_0000859 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000859_tree ,
OG_02_0001138 (LandPlants) Phylogenetic Tree(s): OG_02_0001138_tree ,
OG_03_0001151 (SeedPlants) Phylogenetic Tree(s): OG_03_0001151_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G24790
Cluster	HCCA: Cluster_224

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01036037001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01036499001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
MA_7292g0010	No alias	transcription factor (BBX-CO)	0.03	Archaeplastida
Mp8g13470.1	No alias	transcription factor (BBX-CO)	0.06	Archaeplastida
Solyc07g006630.4.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e022933_P001	No alias	transcription factor (BBX-CO)	0.05	Archaeplastida
GSVIVT01036037001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	LandPlants
GSVIVT01036499001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	LandPlants
Mp8g13470.1	No alias	transcription factor (BBX-CO)	0.04	LandPlants
GSVIVT01036037001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	SeedPlants
GSVIVT01036499001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	RCA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010099	regulation of photomorphogenesis	IMP	Interproscan
BP	GO:0010114	response to red light	RCA	Interproscan
BP	GO:0010155	regulation of proton transport	RCA	Interproscan
BP	GO:0010161	red light signaling pathway	IMP	Interproscan
BP	GO:0010218	response to far red light	RCA	Interproscan
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	RCA	Interproscan
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of ion transmembrane transport	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of ion transport	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071491	cellular response to red light	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1904062	regulation of cation transmembrane transport	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	48	93
IPR000315	Znf_B-box	5	47
IPR010402	CCT_domain	229	271

External Links

No external refs found!

AT2G24790 (COL3, ATCOL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation