AT2G24790 (COL3, ATCOL3)


Aliases : COL3, ATCOL3

Description : CONSTANS-like 3


Gene families : OG_01_0000859 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000859_tree ,
OG_02_0001138 (LandPlants) Phylogenetic Tree(s): OG_02_0001138_tree ,
OG_03_0001151 (SeedPlants) Phylogenetic Tree(s): OG_03_0001151_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G24790
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
MA_7292g0010 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e022933_P001 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 LandPlants
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 LandPlants
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.04 LandPlants
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 SeedPlants
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009637 response to blue light RCA Interproscan
BP GO:0009644 response to high light intensity RCA Interproscan
BP GO:0009744 response to sucrose RCA Interproscan
BP GO:0010099 regulation of photomorphogenesis IMP Interproscan
BP GO:0010114 response to red light RCA Interproscan
BP GO:0010155 regulation of proton transport RCA Interproscan
BP GO:0010161 red light signaling pathway IMP Interproscan
BP GO:0010218 response to far red light RCA Interproscan
BP GO:0032880 regulation of protein localization RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000315 Znf_B-box 48 93
IPR000315 Znf_B-box 5 47
IPR010402 CCT_domain 229 271
No external refs found!