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  5. GSVIVT01011643001

GSVIVT01011643001


Description : RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana


Gene families : OG_01_0000823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000823_tree ,
OG_02_0002293 (LandPlants) Phylogenetic Tree(s): OG_02_0002293_tree ,
OG_03_0004327 (SeedPlants) Phylogenetic Tree(s): OG_03_0004327_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011643001
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00055040 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.02 Archaeplastida
AMTR_s00176p00039530 evm_27.TU.AmTr_v1... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_08306 No alias ssRNA polymerase (RDR6) 0.04 Archaeplastida
Gb_28433 No alias ssRNA polymerase (RDR2) 0.02 Archaeplastida
MA_10431382g0020 No alias RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10435839g0010 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10436273g0010 No alias RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10436625g0010 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc05g007510.4.1 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
AMTR_s00176p00039530 evm_27.TU.AmTr_v1... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.04 LandPlants
MA_10435839g0010 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.05 LandPlants
MA_10436273g0010 No alias RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.05 LandPlants
Solyc05g007510.4.1 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 LandPlants
AMTR_s00176p00039530 evm_27.TU.AmTr_v1... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.04 SeedPlants
MA_10435839g0010 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.05 SeedPlants
Solyc05g007510.4.1 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 344 528
IPR007855 RNA-dep_RNA_pol_euk-typ 544 736
No external refs found!