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  5. GSVIVT01010209001

GSVIVT01010209001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein


Gene families : OG_01_0007099 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007099_tree ,
OG_02_0007306 (LandPlants) Phylogenetic Tree(s): OG_02_0007306_tree ,
OG_03_0008215 (SeedPlants) Phylogenetic Tree(s): OG_03_0008215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010209001
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00102340 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Cre09.g393551 No alias No description available 0.03 Archaeplastida
LOC_Os10g34380.1 No alias pre-mRNA-processing protein (PRP40C) 0.08 Archaeplastida
Mp5g09830.1 No alias pre-mRNA-processing protein (PRP40C) 0.04 Archaeplastida
Pp3c7_20890V3.1 No alias pre-mRNA-processing protein 40C 0.03 Archaeplastida
Smo439648 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Solyc04g008700.3.1 No alias pre-mRNA-processing protein (PRP40C) 0.1 Archaeplastida
Zm00001e012643_P002 No alias pre-mRNA-processing protein (PRP40C) 0.1 Archaeplastida
AMTR_s00029p00102340 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 LandPlants
LOC_Os10g34380.1 No alias pre-mRNA-processing protein (PRP40C) 0.06 LandPlants
Mp5g09830.1 No alias pre-mRNA-processing protein (PRP40C) 0.03 LandPlants
Pp3c11_2890V3.1 No alias pre-mRNA-processing protein 40C 0.01 LandPlants
Pp3c7_20890V3.1 No alias pre-mRNA-processing protein 40C 0.02 LandPlants
Smo439648 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 LandPlants
Solyc04g008700.3.1 No alias pre-mRNA-processing protein (PRP40C) 0.1 LandPlants
Zm00001e012643_P002 No alias pre-mRNA-processing protein (PRP40C) 0.09 LandPlants
AMTR_s00029p00102340 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 SeedPlants
LOC_Os10g34380.1 No alias pre-mRNA-processing protein (PRP40C) 0.07 SeedPlants
Solyc04g008700.3.1 No alias pre-mRNA-processing protein (PRP40C) 0.08 SeedPlants
Zm00001e012643_P002 No alias pre-mRNA-processing protein (PRP40C) 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002713 FF_domain 649 694
IPR002713 FF_domain 884 935
IPR002713 FF_domain 781 829
IPR002713 FF_domain 713 760
IPR001202 WW_dom 424 450
No external refs found!