AT2G23380 (CLF, SET1, ICU1, SDG1)

Aliases : CLF, SET1, ICU1, SDG1

Description : SET domain-containing protein

Gene families : OG_01_0002279 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002279_tree ,
OG_02_0001849 (LandPlants) Phylogenetic Tree(s): OG_02_0001849_tree ,
OG_03_0001954 (SeedPlants) Phylogenetic Tree(s): OG_03_0001954_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G23380
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01022097001	No alias	Chromatin organisation.histone modifications.histone...	0.03	Archaeplastida
LOC_Os06g16390.1	No alias	catalytic component CLF\|SWN\|MEA of VRN/FIS/EMF core...	0.03	Archaeplastida
MA_7025g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Pp3c22_22940V3.1	No alias	SET domain-containing protein	0.02	Archaeplastida
GSVIVT01022097001	No alias	Chromatin organisation.histone modifications.histone...	0.03	LandPlants
LOC_Os06g16390.1	No alias	catalytic component CLF\|SWN\|MEA of VRN/FIS/EMF core...	0.03	LandPlants
MA_7025g0010	No alias	no hits & (original description: none)	0.05	LandPlants
Pp3c22_22940V3.1	No alias	SET domain-containing protein	0.02	LandPlants
LOC_Os06g16390.1	No alias	catalytic component CLF\|SWN\|MEA of VRN/FIS/EMF core...	0.03	SeedPlants
MA_7025g0010	No alias	no hits & (original description: none)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006349	regulation of gene expression by genetic imprinting	IMP	Interproscan
BP	GO:0006349	regulation of gene expression by genetic imprinting	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009292	genetic transfer	None	Extended
BP	GO:0009294	DNA mediated transformation	IMP	Interproscan
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010048	vernalization response	IMP	Interproscan
BP	GO:0010048	vernalization response	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016458	gene silencing	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	IMP	Interproscan
BP	GO:0016571	histone methylation	RCA	Interproscan
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	gene silencing by RNA	RCA	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0040030	regulation of molecular function, epigenetic	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0044764	multi-organism cellular process	None	Extended
BP	GO:0045857	negative regulation of molecular function, epigenetic	IMP	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071514	genetic imprinting	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001214	SET_dom	763	866

External Links

No external refs found!

AT2G23380 (CLF, SET1, ICU1, SDG1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation