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  5. GSVIVT01009918001

GSVIVT01009918001


Description : External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.CERBERUS/LIN ubiquitin E3 ligase


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0003337 (SeedPlants) Phylogenetic Tree(s): OG_03_0003337_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009918001
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00198510 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.02 Archaeplastida
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 Archaeplastida
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 Archaeplastida
GSVIVT01026271001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.04 Archaeplastida
LOC_Os01g12930.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 Archaeplastida
LOC_Os05g30010.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.03 Archaeplastida
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
Mp2g17510.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 Archaeplastida
Smo418457 No alias External stimuli response.biotic... 0.02 Archaeplastida
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 LandPlants
LOC_Os01g12930.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 LandPlants
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 LandPlants
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.02 LandPlants
Smo418457 No alias External stimuli response.biotic... 0.02 LandPlants
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.02 SeedPlants
Gb_02502 No alias Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.02 SeedPlants
LOC_Os01g12930.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 535 604
IPR001680 WD40_repeat 1233 1254
IPR001680 WD40_repeat 1262 1297
No external refs found!