GSVIVT01009838001


Description : Chromatin organisation.histones.H3-type histone


Gene families : OG_01_0000119 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000119_tree ,
OG_02_0000124 (LandPlants) Phylogenetic Tree(s): OG_02_0000124_tree ,
OG_03_0000125 (SeedPlants) Phylogenetic Tree(s): OG_03_0000125_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009838001
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
LOC_Os01g64640.1 No alias histone (H3) 0.03 Archaeplastida
LOC_Os05g41080.1 No alias histone H3 variant (CENH3) 0.04 Archaeplastida
LOC_Os11g05730.1 No alias histone (H3) 0.03 Archaeplastida
MA_125055g0020 No alias Histone H3.2 OS=Cichorium intybus (sp|q5mya4|h32_cicin : 122.0) 0.06 Archaeplastida
MA_197719g0010 No alias histone (H3) 0.03 Archaeplastida
Pp3c20_8550V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Solyc10g008910.1.1 No alias histone (H3) 0.05 Archaeplastida
Solyc12g056540.1.1 No alias histone (H3) 0.03 Archaeplastida
Zm00001e029901_P001 No alias histone (H3) 0.03 Archaeplastida
Zm00001e036599_P001 No alias histone (H3) 0.03 Archaeplastida
Zm00001e040856_P001 No alias histone (H3) 0.03 Archaeplastida
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.06 LandPlants
AT4G40040 No alias Histone superfamily protein 0.04 LandPlants
LOC_Os01g64640.1 No alias histone (H3) 0.03 LandPlants
LOC_Os05g41080.1 No alias histone H3 variant (CENH3) 0.03 LandPlants
MA_197719g0010 No alias histone (H3) 0.03 LandPlants
MA_56411g0010 No alias histone (H3) 0.02 LandPlants
Pp3c20_8550V3.1 No alias Histone superfamily protein 0.04 LandPlants
Pp3c3_37020V3.1 No alias Histone superfamily protein 0.01 LandPlants
Solyc01g074000.3.1 No alias histone (H3) 0.03 LandPlants
Solyc10g008910.1.1 No alias histone (H3) 0.05 LandPlants
Solyc12g056540.1.1 No alias histone (H3) 0.03 LandPlants
Zm00001e016861_P001 No alias histone (H3) 0.02 LandPlants
Zm00001e029901_P001 No alias histone (H3) 0.03 LandPlants
Zm00001e036599_P001 No alias histone (H3) 0.03 LandPlants
Zm00001e040856_P001 No alias histone (H3) 0.03 LandPlants
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.06 SeedPlants
AT4G40040 No alias Histone superfamily protein 0.04 SeedPlants
LOC_Os01g64640.1 No alias histone (H3) 0.03 SeedPlants
LOC_Os05g41080.1 No alias histone H3 variant (CENH3) 0.03 SeedPlants
LOC_Os06g04030.1 No alias histone (H3) 0.02 SeedPlants
LOC_Os11g05730.1 No alias histone (H3) 0.03 SeedPlants
MA_10432805g0020 No alias histone (H3) 0.02 SeedPlants
MA_475294g0010 No alias histone (H3) 0.01 SeedPlants
MA_56411g0010 No alias histone (H3) 0.02 SeedPlants
Solyc01g074000.3.1 No alias histone (H3) 0.03 SeedPlants
Solyc05g051500.4.1 No alias histone (H3) 0.03 SeedPlants
Solyc10g008910.1.1 No alias histone (H3) 0.05 SeedPlants
Solyc12g056540.1.1 No alias histone (H3) 0.03 SeedPlants
Zm00001e008160_P001 No alias histone (H3) 0.01 SeedPlants
Zm00001e016861_P001 No alias histone (H3) 0.02 SeedPlants
Zm00001e019170_P001 No alias histone (H3) 0.02 SeedPlants
Zm00001e036599_P001 No alias histone (H3) 0.03 SeedPlants
Zm00001e040856_P001 No alias histone (H3) 0.03 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!