GSVIVT01009213001

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIa basal transcription factor complex.small subunit

Gene families : OG_01_0005057 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005057_tree ,
OG_02_0005082 (LandPlants) Phylogenetic Tree(s): OG_02_0005082_tree ,
OG_03_0005926 (SeedPlants) Phylogenetic Tree(s): OG_03_0005926_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01009213001
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00259390	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
Cre10.g424150	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
Mp8g03150.1	No alias	small subunit of TFIIa basal transcription factor complex	0.02	Archaeplastida
Pp3c15_13540V3.1	No alias	transcription initiation factor IIA gamma chain /...	0.04	Archaeplastida
AMTR_s00006p00259390	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	LandPlants
Mp8g03150.1	No alias	small subunit of TFIIa basal transcription factor complex	0.02	LandPlants
Pp3c15_13540V3.1	No alias	transcription initiation factor IIA gamma chain /...	0.04	LandPlants
AMTR_s00006p00259390	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005672	transcription factor TFIIA complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	None	Extended
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR015872	TFIIA_gsu_N	61	106
IPR015871	TFIIA_gsu_C	115	158

External Links

No external refs found!

GSVIVT01009213001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation