AT2G22540 (SVP, AGL22)


Aliases : SVP, AGL22

Description : K-box region and MADS-box transcription factor family protein


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0004419 (LandPlants) Phylogenetic Tree(s): OG_02_0004419_tree ,
OG_03_0002756 (SeedPlants) Phylogenetic Tree(s): OG_03_0002756_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G22540
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000175001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01010521001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01018446001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01019883001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9382435g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Zm00001e039610_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
LOC_Os03g08754.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 SeedPlants
GSVIVT01015649001 No alias No description available 0.03 SeedPlants
LOC_Os03g08754.1 No alias transcription factor (MADS/AGL) 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade RCA Interproscan
MF GO:0000900 translation repressor activity, mRNA regulatory element binding IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity TAS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
BP GO:0009266 response to temperature stimulus IMP Interproscan
BP GO:0009556 microsporogenesis RCA Interproscan
BP GO:0009617 response to bacterium RCA Interproscan
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0009910 negative regulation of flower development IMP Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010076 maintenance of floral meristem identity IGI Interproscan
BP GO:0010310 regulation of hydrogen peroxide metabolic process RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0010582 floral meristem determinacy IGI Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0031348 negative regulation of defense response RCA Interproscan
BP GO:0035304 regulation of protein dephosphorylation RCA Interproscan
BP GO:0045892 negative regulation of transcription, DNA-templated IDA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0048438 floral whorl development IGI Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
BP GO:0052543 callose deposition in cell wall RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 92 170
No external refs found!