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  5. GSVIVT01007844001

GSVIVT01007844001


Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP2/TAC2 component


Gene families : OG_01_0008584 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008584_tree ,
OG_02_0007907 (LandPlants) Phylogenetic Tree(s): OG_02_0007907_tree ,
OG_03_0010613 (SeedPlants) Phylogenetic Tree(s): OG_03_0010613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007844001
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
AT1G74850 PTAC2 plastid transcriptionally active 2 0.12 Archaeplastida
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.07 Archaeplastida
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.05 Archaeplastida
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.07 Archaeplastida
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 LandPlants
AT1G74850 PTAC2 plastid transcriptionally active 2 0.11 LandPlants
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 LandPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.05 LandPlants
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.05 LandPlants
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.04 LandPlants
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 LandPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 LandPlants
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 SeedPlants
AT1G74850 PTAC2 plastid transcriptionally active 2 0.11 SeedPlants
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.07 SeedPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.05 SeedPlants
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 SeedPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 330 356
IPR002885 Pentatricopeptide_repeat 362 389
IPR002885 Pentatricopeptide_repeat 292 321
IPR002885 Pentatricopeptide_repeat 148 195
IPR002885 Pentatricopeptide_repeat 78 123
IPR002885 Pentatricopeptide_repeat 1 57
IPR002885 Pentatricopeptide_repeat 418 466
IPR002885 Pentatricopeptide_repeat 211 266
No external refs found!