GSVIVT01007832001

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.OTP43 splicing factor

Gene families : OG_01_0003319 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003319_tree ,
OG_02_0003235 (LandPlants) Phylogenetic Tree(s): OG_02_0003235_tree ,
OG_03_0003409 (SeedPlants) Phylogenetic Tree(s): OG_03_0003409_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007832001

Target	Alias	Description	ECC score	Gene Family Method
AT3G01330	E2FF, DEL3, E2L2	DP-E2F-like protein 3	0.05	Archaeplastida
LOC_Os02g50630.1	No alias	DEL cell cycle interphase transcription factor....	0.04	Archaeplastida
Mp3g20990.1	No alias	DEL cell cycle interphase transcription factor....	0.01	Archaeplastida
Pp3c19_18240V3.1	No alias	DP-E2F-like 1	0.02	Archaeplastida
Pp3c21_13480V3.1	No alias	DP-E2F-like 1	0.07	Archaeplastida
Solyc02g087310.3.1	No alias	DEL cell cycle interphase transcription factor....	0.03	Archaeplastida
Solyc03g113760.3.1	No alias	DEL cell cycle interphase transcription factor....	0.03	Archaeplastida
Zm00001e030907_P001	No alias	DEL cell cycle interphase transcription factor....	0.02	Archaeplastida
AT3G01330	E2FF, DEL3, E2L2	DP-E2F-like protein 3	0.02	LandPlants
LOC_Os02g50630.1	No alias	DEL cell cycle interphase transcription factor....	0.02	LandPlants
Mp3g20990.1	No alias	DEL cell cycle interphase transcription factor....	0.01	LandPlants
Pp3c19_18240V3.1	No alias	DP-E2F-like 1	0.02	LandPlants
Pp3c21_13480V3.1	No alias	DP-E2F-like 1	0.05	LandPlants
Solyc02g087310.3.1	No alias	DEL cell cycle interphase transcription factor....	0.03	LandPlants
Solyc03g113760.3.1	No alias	DEL cell cycle interphase transcription factor....	0.03	LandPlants
Zm00001e030907_P001	No alias	DEL cell cycle interphase transcription factor....	0.02	LandPlants
AT3G01330	E2FF, DEL3, E2L2	DP-E2F-like protein 3	0.02	SeedPlants
AT3G48160	DEL1, E2FE, E2L3	DP-E2F-like 1	0.02	SeedPlants
LOC_Os02g50630.1	No alias	DEL cell cycle interphase transcription factor....	0.02	SeedPlants
Solyc02g087310.3.1	No alias	DEL cell cycle interphase transcription factor....	0.03	SeedPlants
Solyc03g113760.3.1	No alias	DEL cell cycle interphase transcription factor....	0.03	SeedPlants
Zm00001e030907_P001	No alias	DEL cell cycle interphase transcription factor....	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	259	308
IPR002885	Pentatricopeptide_repeat	329	376
IPR002885	Pentatricopeptide_repeat	198	236
IPR002885	Pentatricopeptide_repeat	124	181
IPR003316	E2F_WHTH_DNA-bd_dom	592	670
IPR003316	E2F_WHTH_DNA-bd_dom	460	524

External Links

No external refs found!

GSVIVT01007832001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation