AT2G19520 (NFC04, MSI4, NFC4,...)


Aliases : NFC04, MSI4, NFC4, ACG1, FVE, ATMSI4

Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0003821 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003821_tree ,
OG_02_0007180 (LandPlants) Phylogenetic Tree(s): OG_02_0007180_tree ,
OG_03_0006388 (SeedPlants) Phylogenetic Tree(s): OG_03_0006388_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G19520
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01015200001 No alias Chromatin organisation.histone chaperone activities.CAF1... 0.03 Archaeplastida
GSVIVT01016852001 No alias Chromatin organisation.histone chaperone activities.CAF1... 0.03 Archaeplastida
Solyc03g121580.3.1 No alias component CAF1c/MSI of CAF1 histone chaperone complex 0.07 Archaeplastida
Zm00001e020000_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e028156_P001 No alias component CAF1c/MSI of CAF1 histone chaperone complex 0.03 Archaeplastida
GSVIVT01015200001 No alias Chromatin organisation.histone chaperone activities.CAF1... 0.03 LandPlants
GSVIVT01016852001 No alias Chromatin organisation.histone chaperone activities.CAF1... 0.03 LandPlants
Solyc03g121580.3.1 No alias component CAF1c/MSI of CAF1 histone chaperone complex 0.06 LandPlants
Zm00001e020000_P002 No alias no hits & (original description: none) 0.03 LandPlants
GSVIVT01015200001 No alias Chromatin organisation.histone chaperone activities.CAF1... 0.03 SeedPlants
GSVIVT01016852001 No alias Chromatin organisation.histone chaperone activities.CAF1... 0.02 SeedPlants
LOC_Os01g51300.1 No alias component CAF1c/MSI of CAF1 histone chaperone complex 0.01 SeedPlants
Solyc03g121580.3.1 No alias component CAF1c/MSI of CAF1 histone chaperone complex 0.05 SeedPlants
Zm00001e020000_P002 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e028156_P001 No alias component CAF1c/MSI of CAF1 histone chaperone complex 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006281 DNA repair IMP Interproscan
BP GO:0009826 unidimensional cell growth IMP Interproscan
BP GO:0009908 flower development IMP Interproscan
BP GO:0009965 leaf morphogenesis IMP Interproscan
BP GO:0010090 trichome morphogenesis IMP Interproscan
BP GO:0010224 response to UV-B IEP Interproscan
MF GO:0046872 metal ion binding IDA Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 66 132
IPR001680 WD40_repeat 286 321
IPR001680 WD40_repeat 334 366
IPR001680 WD40_repeat 376 415
IPR001680 WD40_repeat 213 248
No external refs found!