AT2G19520 (NFC04, MSI4, NFC4,...)

Aliases : NFC04, MSI4, NFC4, ACG1, FVE, ATMSI4

Description : Transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0003821 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003821_tree ,
OG_02_0007180 (LandPlants) Phylogenetic Tree(s): OG_02_0007180_tree ,
OG_03_0006388 (SeedPlants) Phylogenetic Tree(s): OG_03_0006388_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G19520
Cluster	HCCA: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01015200001	No alias	Chromatin organisation.histone chaperone activities.CAF1...	0.03	Archaeplastida
GSVIVT01016852001	No alias	Chromatin organisation.histone chaperone activities.CAF1...	0.03	Archaeplastida
Solyc03g121580.3.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.07	Archaeplastida
Zm00001e020000_P002	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e028156_P001	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.03	Archaeplastida
GSVIVT01015200001	No alias	Chromatin organisation.histone chaperone activities.CAF1...	0.03	LandPlants
GSVIVT01016852001	No alias	Chromatin organisation.histone chaperone activities.CAF1...	0.03	LandPlants
Solyc03g121580.3.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.06	LandPlants
Zm00001e020000_P002	No alias	no hits & (original description: none)	0.03	LandPlants
GSVIVT01015200001	No alias	Chromatin organisation.histone chaperone activities.CAF1...	0.03	SeedPlants
GSVIVT01016852001	No alias	Chromatin organisation.histone chaperone activities.CAF1...	0.02	SeedPlants
LOC_Os01g51300.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.01	SeedPlants
Solyc03g121580.3.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.05	SeedPlants
Zm00001e020000_P002	No alias	no hits & (original description: none)	0.03	SeedPlants
Zm00001e028156_P001	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009826	unidimensional cell growth	IMP	Interproscan
BP	GO:0009908	flower development	IMP	Interproscan
BP	GO:0009965	leaf morphogenesis	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010090	trichome morphogenesis	IMP	Interproscan
BP	GO:0010224	response to UV-B	IEP	Interproscan
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040007	growth	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IDA	Interproscan
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR022052	Histone-bd_RBBP4_N	66	132
IPR001680	WD40_repeat	286	321
IPR001680	WD40_repeat	334	366
IPR001680	WD40_repeat	376	415
IPR001680	WD40_repeat	213	248

External Links

No external refs found!

AT2G19520 (NFC04, MSI4, NFC4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation