AT2G18790 (HY3, OOP1, PHYB)


Aliases : HY3, OOP1, PHYB

Description : phytochrome B


Gene families : OG_01_0000908 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000908_tree ,
OG_02_0000972 (LandPlants) Phylogenetic Tree(s): OG_02_0000972_tree ,
OG_03_0004471 (SeedPlants) Phylogenetic Tree(s): OG_03_0004471_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G18790
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
Solyc07g045480.3.1 No alias phytochrome photoreceptor (PHY) 0.03 Archaeplastida
Zm00001e001462_P001 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.03 Archaeplastida
GSVIVT01034989001 No alias External stimuli response.light.red/far red light.PHY... 0.02 LandPlants
Solyc01g059870.4.1 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.02 LandPlants
Solyc07g045480.3.1 No alias phytochrome photoreceptor (PHY) 0.03 LandPlants
GSVIVT01034989001 No alias External stimuli response.light.red/far red light.PHY... 0.02 SeedPlants
Solyc01g059870.4.1 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004673 protein histidine kinase activity ISS Interproscan
MF GO:0004871 obsolete signal transducer activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0006325 chromatin organization IMP Interproscan
BP GO:0006355 regulation of transcription, DNA-templated ISS Interproscan
BP GO:0007623 circadian rhythm RCA Interproscan
MF GO:0008020 G protein-coupled photoreceptor activity ISS Interproscan
BP GO:0009409 response to cold IMP Interproscan
BP GO:0009630 gravitropism IMP Interproscan
BP GO:0009630 gravitropism RCA Interproscan
BP GO:0009638 phototropism IMP Interproscan
BP GO:0009640 photomorphogenesis IMP Interproscan
BP GO:0009649 entrainment of circadian clock IMP Interproscan
BP GO:0009687 abscisic acid metabolic process IMP Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway IMP Interproscan
MF GO:0009883 red or far-red light photoreceptor activity IMP Interproscan
BP GO:0010017 red or far-red light signaling pathway RCA Interproscan
BP GO:0010029 regulation of seed germination IMP Interproscan
BP GO:0010148 transpiration IMP Interproscan
BP GO:0010155 regulation of proton transport RCA Interproscan
BP GO:0010161 red light signaling pathway IMP Interproscan
BP GO:0010202 response to low fluence red light stimulus IMP Interproscan
BP GO:0010218 response to far red light IMP Interproscan
BP GO:0010374 stomatal complex development IMP Interproscan
BP GO:0010617 circadian regulation of calcium ion oscillation IMP Interproscan
BP GO:0015979 photosynthesis IMP Interproscan
CC GO:0016604 nuclear body IDA Interproscan
BP GO:0031347 regulation of defense response IMP Interproscan
MF GO:0031516 far-red light photoreceptor activity IDA Interproscan
MF GO:0031517 red light photoreceptor activity IDA Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
BP GO:0046685 response to arsenic-containing substance RCA Interproscan
BP GO:0046777 protein autophosphorylation RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003594 HATPase_C 1039 1140
IPR013654 PAS_2 103 219
IPR003018 GAF 252 433
IPR003661 HisK_dim/P 930 991
IPR013515 Phytochrome_cen-reg 446 621
IPR013767 PAS_fold 786 905
IPR013767 PAS_fold 655 770
No external refs found!