AT2G18640 (GGPS4)

Aliases : GGPS4

Description : geranylgeranyl pyrophosphate synthase 4

Gene families : OG_01_0000728 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000728_tree ,
OG_02_0001040 (LandPlants) Phylogenetic Tree(s): OG_02_0001040_tree ,
OG_03_0001095 (SeedPlants) Phylogenetic Tree(s): OG_03_0001095_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G18640
Cluster	HCCA: Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
AT3G32040	No alias	Terpenoid synthases superfamily protein	0.05	Archaeplastida
MA_10429253g0010	No alias	isoprenyl diphosphate synthase	0.03	Archaeplastida
MA_10429756g0010	No alias	isoprenyl diphosphate synthase	0.04	Archaeplastida
MA_4877308g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_543467g0010	No alias	isoprenyl diphosphate synthase	0.02	Archaeplastida
MA_888237g0010	No alias	isoprenyl diphosphate synthase	0.04	Archaeplastida
Smo133501	No alias	Secondary metabolism.terpenoids.methylerythritol...	0.01	Archaeplastida
Solyc11g011240.1.1	No alias	isoprenyl diphosphate synthase	0.02	Archaeplastida
MA_543467g0010	No alias	isoprenyl diphosphate synthase	0.01	LandPlants
AT3G32040	No alias	Terpenoid synthases superfamily protein	0.02	SeedPlants
MA_543467g0010	No alias	isoprenyl diphosphate synthase	0.01	SeedPlants
Zm00001e035362_P001	No alias	isoprenyl diphosphate synthase	0.01	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004311	farnesyltranstransferase activity	IDA	Interproscan
MF	GO:0004311	farnesyltranstransferase activity	IGI	Interproscan
MF	GO:0004659	prenyltransferase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	ISS	Interproscan
BP	GO:0008299	isoprenoid biosynthetic process	TAS	Interproscan
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000092	Polyprenyl_synt	108	342

External Links

No external refs found!

AT2G18640 (GGPS4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation