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AT2G18520


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0004280 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004280_tree ,
OG_02_0002954 (LandPlants) Phylogenetic Tree(s): OG_02_0002954_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G18520
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 Archaeplastida
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.04 Archaeplastida
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 Archaeplastida
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.1 Archaeplastida
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.05 Archaeplastida
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.07 Archaeplastida
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 LandPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 LandPlants
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.04 LandPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 LandPlants
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 LandPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.08 LandPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.05 LandPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 LandPlants
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 SeedPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 SeedPlants
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 SeedPlants
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 SeedPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 SeedPlants
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.02 SeedPlants
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.08 SeedPlants
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 SeedPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 SeedPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.04 SeedPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 SeedPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.05 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 106 132
IPR002885 Pentatricopeptide_repeat 138 163
IPR002885 Pentatricopeptide_repeat 172 220
IPR002885 Pentatricopeptide_repeat 276 320
No external refs found!