GSVIVT01000559001


Description : Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0010380 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010380_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree ,
OG_03_0007555 (SeedPlants) Phylogenetic Tree(s): OG_03_0007555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000559001
Cluster HCCA: Cluster_472

Target Alias Description ECC score Gene Family Method Actions
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.03 LandPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 LandPlants
Gb_03488 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.04 LandPlants
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.07 LandPlants
MA_20659g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.17 LandPlants
MA_863891g0010 No alias no hits & (original description: none) 0.03 LandPlants
Mp1g11730.1 No alias Pentatricopeptide repeat-containing protein At1g62670,... 0.01 LandPlants
Solyc06g008190.1.1 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 LandPlants
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.03 SeedPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 SeedPlants
Solyc06g008190.1.1 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 16 40
IPR002885 Pentatricopeptide_repeat 465 495
IPR002885 Pentatricopeptide_repeat 221 250
IPR002885 Pentatricopeptide_repeat 70 123
IPR002885 Pentatricopeptide_repeat 147 196
IPR002885 Pentatricopeptide_repeat 323 370
IPR002885 Pentatricopeptide_repeat 392 441
IPR002885 Pentatricopeptide_repeat 252 301
No external refs found!