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  5. Solyc12g088290.2.1

Solyc12g088290.2.1


Description : SSU processome assembly factor (UTP4/PCN)


Gene families : OG_01_0004823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004823_tree ,
OG_02_0004498 (LandPlants) Phylogenetic Tree(s): OG_02_0004498_tree ,
OG_03_0005446 (SeedPlants) Phylogenetic Tree(s): OG_03_0005446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088290.2.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00140150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Cpa|evm.model.tig00000852.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Cre13.g606850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
MA_10435752g0010 No alias SSU processome assembly factor (UTP4/PCN) 0.02 Archaeplastida
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.03 Archaeplastida
Pp3c19_13580V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
Smo74975 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.03 Archaeplastida
AMTR_s00065p00140150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 LandPlants
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 LandPlants
MA_10435752g0010 No alias SSU processome assembly factor (UTP4/PCN) 0.02 LandPlants
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.03 LandPlants
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.06 LandPlants
Smo74975 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 LandPlants
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.02 LandPlants
AMTR_s00065p00140150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 SeedPlants
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 SeedPlants
MA_10435752g0010 No alias SSU processome assembly factor (UTP4/PCN) 0.02 SeedPlants
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.02 SeedPlants
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 208 231
IPR001680 WD40_repeat 286 321
No external refs found!