Solyc12g070270.2.1


Description : subfamily ABCB transporter


Gene families : OG_01_0001563 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001563_tree ,
OG_02_0007198 (LandPlants) Phylogenetic Tree(s): OG_02_0007198_tree ,
OG_03_0008022 (SeedPlants) Phylogenetic Tree(s): OG_03_0008022_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g070270.2.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G70610 ATTAP1, TAP1 transporter associated with antigen processing protein 1 0.03 Archaeplastida
GSVIVT01005757001 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
GSVIVT01008121001 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Gb_35052 No alias subfamily ABCB transporter 0.03 Archaeplastida
LOC_Os01g68330.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_10428929g0010 No alias ABC transporter B family member 26, chloroplastic... 0.03 Archaeplastida
Mp1g18530.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e018873_P003 No alias subfamily ABCB transporter 0.1 Archaeplastida
Gb_35052 No alias subfamily ABCB transporter 0.02 LandPlants
Mp1g18530.1 No alias subfamily ABCB transporter 0.02 LandPlants
Zm00001e018873_P003 No alias subfamily ABCB transporter 0.09 LandPlants
Gb_35052 No alias subfamily ABCB transporter 0.02 SeedPlants
LOC_Os01g68330.1 No alias subfamily ABCB transporter 0.02 SeedPlants
MA_10428929g0010 No alias ABC transporter B family member 26, chloroplastic... 0.01 SeedPlants
Zm00001e018873_P003 No alias subfamily ABCB transporter 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 130 395
No external refs found!