Solyc12g056740.2.1


Description : DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica (sp|q5vry0|rh39_orysj : 663.0)


Gene families : OG_01_0005822 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005822_tree ,
OG_02_0008168 (LandPlants) Phylogenetic Tree(s): OG_02_0008168_tree ,
OG_03_0009649 (SeedPlants) Phylogenetic Tree(s): OG_03_0009649_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056740.2.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.1 Archaeplastida
AT4G09730 RH39 RH39 0.2 Archaeplastida
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.11 Archaeplastida
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 Archaeplastida
MA_10427047g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 Archaeplastida
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 Archaeplastida
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 Archaeplastida
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.12 Archaeplastida
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 LandPlants
AT4G09730 RH39 RH39 0.19 LandPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 LandPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 LandPlants
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 LandPlants
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 LandPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.11 LandPlants
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 SeedPlants
AT4G09730 RH39 RH39 0.18 SeedPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 SeedPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 SeedPlants
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 SeedPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.1 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 135 318
IPR001650 Helicase_C 354 465
No external refs found!