Solyc12g035170.3.1


Description : Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana (sp|q9ca58|pp120_arath : 600.0)


Gene families : OG_01_0000198 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000198_tree ,
OG_02_0000086 (LandPlants) Phylogenetic Tree(s): OG_02_0000086_tree ,
OG_03_0000170 (SeedPlants) Phylogenetic Tree(s): OG_03_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g035170.3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.03 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.02 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.07 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.05 Archaeplastida
AMTR_s00078p00041370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.07 Archaeplastida
AMTR_s00135p00057260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g18475... 0.02 Archaeplastida
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 Archaeplastida
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_06545 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.04 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.04 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.03 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida
Gb_38399 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.05 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.05 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 Archaeplastida
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.05 Archaeplastida
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.04 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.05 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e028732_P001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.06 Archaeplastida
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.03 LandPlants
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.02 LandPlants
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.07 LandPlants
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.02 LandPlants
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.03 LandPlants
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 LandPlants
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
Gb_06893 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 LandPlants
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 LandPlants
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 LandPlants
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 LandPlants
Gb_38399 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.05 LandPlants
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 LandPlants
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 LandPlants
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.05 LandPlants
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 LandPlants
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.03 LandPlants
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.05 LandPlants
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 LandPlants
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 LandPlants
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
Smo74408 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.02 LandPlants
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
Zm00001e003447_P001 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e011589_P001 No alias no hits & (original description: none) 0.05 LandPlants
Zm00001e028732_P001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 LandPlants
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.06 LandPlants
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 SeedPlants
AMTR_s00025p00221220 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g07740,... 0.02 SeedPlants
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.02 SeedPlants
AMTR_s00066p00107660 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 SeedPlants
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 SeedPlants
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.02 SeedPlants
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 SeedPlants
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 SeedPlants
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 SeedPlants
Gb_38399 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 SeedPlants
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 SeedPlants
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.02 SeedPlants
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.05 SeedPlants
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 SeedPlants
Solyc11g068470.3.1 No alias group-II intron mitochondrial splicing factor (MISF74) 0.03 SeedPlants
Zm00001e011589_P001 No alias no hits & (original description: none) 0.05 SeedPlants
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.02 SeedPlants
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 SeedPlants
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 79 100
IPR002885 Pentatricopeptide_repeat 509 534
IPR002885 Pentatricopeptide_repeat 433 480
IPR002885 Pentatricopeptide_repeat 325 374
IPR002885 Pentatricopeptide_repeat 221 269
IPR002885 Pentatricopeptide_repeat 116 164
IPR002885 Pentatricopeptide_repeat 181 212
IPR002885 Pentatricopeptide_repeat 391 424
IPR002885 Pentatricopeptide_repeat 286 318
No external refs found!