AT2G15820 (OTP51)


Aliases : OTP51

Description : endonucleases


Gene families : OG_01_0007260 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007260_tree ,
OG_02_0006849 (LandPlants) Phylogenetic Tree(s): OG_02_0006849_tree ,
OG_03_0008359 (SeedPlants) Phylogenetic Tree(s): OG_03_0008359_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G15820
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.09 Archaeplastida
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.09 Archaeplastida
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 LandPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.09 LandPlants
Pp3c25_10050V3.1 No alias endonucleases 0.02 LandPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.03 LandPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.08 LandPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.03 SeedPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.03 SeedPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.09 SeedPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.03 SeedPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.08 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IMP Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009507 chloroplast RCA Interproscan
BP GO:0045292 mRNA cis splicing, via spliceosome IMP Interproscan
BP GO:0048564 photosystem I assembly IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 532 560
IPR002885 Pentatricopeptide_repeat 433 454
IPR002885 Pentatricopeptide_repeat 284 307
IPR004860 LAGLIDADG_2 632 795
No external refs found!