AT2G15820 (OTP51)

Aliases : OTP51

Description : endonucleases

Gene families : OG_01_0007260 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007260_tree ,
OG_02_0006849 (LandPlants) Phylogenetic Tree(s): OG_02_0006849_tree ,
OG_03_0008359 (SeedPlants) Phylogenetic Tree(s): OG_03_0008359_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G15820
Cluster	HCCA: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01031785001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Gb_32793	No alias	OTP51 plastidial RNA splicing factor	0.04	Archaeplastida
LOC_Os02g47360.1	No alias	OTP51 plastidial RNA splicing factor	0.09	Archaeplastida
Solyc11g066850.3.1	No alias	OTP51 plastidial RNA splicing factor	0.04	Archaeplastida
Zm00001e015566_P003	No alias	OTP51 plastidial RNA splicing factor	0.09	Archaeplastida
GSVIVT01031785001	No alias	RNA processing.organelle machineries.RNA...	0.03	LandPlants
Gb_32793	No alias	OTP51 plastidial RNA splicing factor	0.04	LandPlants
LOC_Os02g47360.1	No alias	OTP51 plastidial RNA splicing factor	0.09	LandPlants
Pp3c25_10050V3.1	No alias	endonucleases	0.02	LandPlants
Solyc11g066850.3.1	No alias	OTP51 plastidial RNA splicing factor	0.03	LandPlants
Zm00001e015566_P003	No alias	OTP51 plastidial RNA splicing factor	0.08	LandPlants
GSVIVT01031785001	No alias	RNA processing.organelle machineries.RNA...	0.03	SeedPlants
Gb_32793	No alias	OTP51 plastidial RNA splicing factor	0.03	SeedPlants
LOC_Os02g47360.1	No alias	OTP51 plastidial RNA splicing factor	0.09	SeedPlants
Solyc11g066850.3.1	No alias	OTP51 plastidial RNA splicing factor	0.03	SeedPlants
Zm00001e015566_P003	No alias	OTP51 plastidial RNA splicing factor	0.08	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IMP	Interproscan
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
CC	GO:0009507	chloroplast	RCA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045292	mRNA cis splicing, via spliceosome	IMP	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048564	photosystem I assembly	IMP	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	532	560
IPR002885	Pentatricopeptide_repeat	433	454
IPR002885	Pentatricopeptide_repeat	284	307
IPR004860	LAGLIDADG_2	632	795

External Links

No external refs found!

AT2G15820 (OTP51)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation