AMTR_s00009p00253500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.266

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG_01_0001111 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001111_tree ,
OG_02_0005382 (LandPlants) Phylogenetic Tree(s): OG_02_0005382_tree ,
OG_03_0006202 (SeedPlants) Phylogenetic Tree(s): OG_03_0006202_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00253500
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.07 Archaeplastida
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.09 Archaeplastida
AT4G20400 PKDM7B, JMJ14 JUMONJI 14 0.03 Archaeplastida
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.09 Archaeplastida
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 Archaeplastida
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 Archaeplastida
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 Archaeplastida
MA_91656g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.06 Archaeplastida
Pp3c16_4220V3.1 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.03 Archaeplastida
Pp3c21_10100V3.1 No alias JUMONJI 14 0.03 Archaeplastida
Solyc04g009990.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 Archaeplastida
Solyc08g081000.3.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 Archaeplastida
Zm00001e013363_P002 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 Archaeplastida
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 Archaeplastida
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.06 LandPlants
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 LandPlants
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 LandPlants
MA_10436180g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.03 LandPlants
MA_91656g0010 No alias no hits & (original description: none) 0.03 LandPlants
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.05 LandPlants
Pp3c21_10100V3.1 No alias JUMONJI 14 0.03 LandPlants
Zm00001e013363_P002 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 LandPlants
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.06 SeedPlants
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 SeedPlants
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 SeedPlants
MA_10436180g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.03 SeedPlants
MA_91656g0010 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc08g081000.3.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 SeedPlants
Zm00001e013363_P002 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013637 Lys_sp_deMease-like_dom 982 1236
IPR013637 Lys_sp_deMease-like_dom 1265 1442
IPR013637 Lys_sp_deMease-like_dom 1539 1725
IPR013637 Lys_sp_deMease-like_dom 804 978
IPR019787 Znf_PHD-finger 1737 1781
IPR019787 Znf_PHD-finger 282 329
IPR004198 Znf_C5HC2 662 714
IPR001606 ARID_dom 108 189
IPR003349 JmjN 33 66
IPR003347 JmjC_dom 453 569
No external refs found!