Solyc12g005580.2.1


Description : SYP1-group Qa-type SNARE component


Gene families : OG_01_0000372 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000372_tree ,
OG_02_0000804 (LandPlants) Phylogenetic Tree(s): OG_02_0000804_tree ,
OG_03_0000894 (SeedPlants) Phylogenetic Tree(s): OG_03_0000894_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005580.2.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00136390 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.06 Archaeplastida
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.1 Archaeplastida
AT1G61290 ATSYP124, SYP124 syntaxin of plants 124 0.03 Archaeplastida
AT3G03800 ATSYP131, SYP131 syntaxin of plants 131 0.15 Archaeplastida
AT3G11820 SYP121,... syntaxin of plants 121 0.04 Archaeplastida
AT3G52400 SYP122, ATSYP122 syntaxin of plants 122 0.04 Archaeplastida
AT4G03330 SYP123, ATSYP123 syntaxin of plants 123 0.04 Archaeplastida
Cre13.g588550 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
GSVIVT01006716001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.04 Archaeplastida
GSVIVT01030578001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.07 Archaeplastida
Gb_34888 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
LOC_Os02g11890.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
LOC_Os03g57310.1 No alias SYP1-group Qa-type SNARE component 0.03 Archaeplastida
LOC_Os06g07200.1 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
LOC_Os06g39050.1 No alias SYP1-group Qa-type SNARE component 0.09 Archaeplastida
LOC_Os07g07000.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
MA_10427190g0010 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Smo443146 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
Solyc10g008570.3.1 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Solyc10g081850.3.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Zm00001e030621_P001 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e037387_P002 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
AMTR_s00111p00136390 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.04 LandPlants
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.07 LandPlants
AT1G61290 ATSYP124, SYP124 syntaxin of plants 124 0.02 LandPlants
AT3G11820 SYP121,... syntaxin of plants 121 0.02 LandPlants
AT4G03330 SYP123, ATSYP123 syntaxin of plants 123 0.04 LandPlants
GSVIVT01006716001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 LandPlants
GSVIVT01030578001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.07 LandPlants
LOC_Os02g11890.1 No alias SYP1-group Qa-type SNARE component 0.02 LandPlants
LOC_Os03g57310.1 No alias SYP1-group Qa-type SNARE component 0.03 LandPlants
LOC_Os06g39050.1 No alias SYP1-group Qa-type SNARE component 0.06 LandPlants
Zm00001e030621_P001 No alias SYP1-group Qa-type SNARE component 0.03 LandPlants
Zm00001e037387_P002 No alias SYP1-group Qa-type SNARE component 0.03 LandPlants
AMTR_s00111p00136390 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.04 SeedPlants
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.08 SeedPlants
AT1G61290 ATSYP124, SYP124 syntaxin of plants 124 0.02 SeedPlants
AT4G03330 SYP123, ATSYP123 syntaxin of plants 123 0.03 SeedPlants
GSVIVT01006716001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 SeedPlants
GSVIVT01030578001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.07 SeedPlants
LOC_Os02g11890.1 No alias SYP1-group Qa-type SNARE component 0.02 SeedPlants
LOC_Os06g39050.1 No alias SYP1-group Qa-type SNARE component 0.06 SeedPlants
Zm00001e030621_P001 No alias SYP1-group Qa-type SNARE component 0.02 SeedPlants
Zm00001e037387_P002 No alias SYP1-group Qa-type SNARE component 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 246 296
IPR006011 Syntaxin_N 39 244
No external refs found!