Solyc11g069190.2.1


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0002431 (SeedPlants) Phylogenetic Tree(s): OG_03_0002431_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g069190.2.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AMTR_s00034p00110140 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00155p00082980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 Archaeplastida
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_31132 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os10g33940.1 No alias transcription factor (ARF) 0.05 Archaeplastida
MA_10432528g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g07070.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.04 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e032135_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e036249_P003 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e041248_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.04 Archaeplastida
AMTR_s00021p00221770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
AMTR_s00034p00110140 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
GSVIVT01019566001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 LandPlants
MA_10432580g0010 No alias transcription factor (ARF) 0.02 LandPlants
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 LandPlants
AMTR_s00034p00110140 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 176 277
IPR010525 Auxin_resp 303 383
IPR033389 AUX/IAA_dom 676 767
No external refs found!