Solyc11g066850.3.1


Description : OTP51 plastidial RNA splicing factor


Gene families : OG_01_0007260 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007260_tree ,
OG_02_0006849 (LandPlants) Phylogenetic Tree(s): OG_02_0006849_tree ,
OG_03_0008359 (SeedPlants) Phylogenetic Tree(s): OG_03_0008359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g066850.3.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AT2G15820 OTP51 endonucleases 0.04 Archaeplastida
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.07 Archaeplastida
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.07 Archaeplastida
AT2G15820 OTP51 endonucleases 0.03 LandPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 LandPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.06 LandPlants
MA_10427446g0010 No alias OTP51 plastidial RNA splicing factor 0.02 LandPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.07 LandPlants
AT2G15820 OTP51 endonucleases 0.03 SeedPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.04 SeedPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.02 SeedPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.05 SeedPlants
MA_10427446g0010 No alias OTP51 plastidial RNA splicing factor 0.02 SeedPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004860 LAGLIDADG_2 596 760
IPR002885 Pentatricopeptide_repeat 359 381
IPR002885 Pentatricopeptide_repeat 397 417
IPR002885 Pentatricopeptide_repeat 532 558
IPR002885 Pentatricopeptide_repeat 495 521
No external refs found!