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  5. AT2G13370

AT2G13370 (CHR5)


Aliases : CHR5

Description : chromatin remodeling 5


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0006319 (LandPlants) Phylogenetic Tree(s): OG_02_0006319_tree ,
OG_03_0009471 (SeedPlants) Phylogenetic Tree(s): OG_03_0009471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G13370
Cluster HCCA: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.1 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.15 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.09 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021275.25 No alias Probable chromatin-remodeling complex ATPase chain... 0.01 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.06 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.16 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.21 Archaeplastida
GSVIVT01017821001 No alias No description available 0.15 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.16 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.15 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.18 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.06 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.09 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.05 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.09 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.04 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.07 Archaeplastida
MA_10436824g0010 No alias No annotation 0.14 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
MA_470488g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.12 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.11 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.11 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.08 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.09 Archaeplastida
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.1 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.05 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.09 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.14 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.13 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.11 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.07 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.05 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.1 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.15 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.09 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.1 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.08 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.14 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.07 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.16 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.06 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.16 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.14 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 LandPlants
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.18 LandPlants
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 LandPlants
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 LandPlants
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 LandPlants
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.1 LandPlants
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.1 LandPlants
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.12 LandPlants
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.1 LandPlants
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.06 LandPlants
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.03 LandPlants
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 SeedPlants
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.18 SeedPlants
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 SeedPlants
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 SeedPlants
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 SeedPlants
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.06 SeedPlants
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003682 chromatin binding ISS Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006333 chromatin assembly or disassembly ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 534 588
IPR001650 Helicase_C 940 1053
IPR000330 SNF2_dom 645 913
IPR025260 DUF4208 1533 1627
No external refs found!