Cre10.g438700


Description : 29.2.2.3.4 protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.WD-repeat proteins transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0006968 (Gene family) Phylogenetic Tree(s): OG0006968_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cre10.g438700
Cluster HCCA cluster: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT3G21540 No alias transducin family protein / WD-40 repeat family protein 0.15 Gene family
Cpa|evm.model.tig00021721.26 No alias 29.2.2.3.4 protein.synthesis.ribosome... 0.1 Gene family
GSVIVT01033690001 No alias 29.2.2.3.4 protein.synthesis.ribosome... 0.16 Gene family
LOC_Os03g05720 Os03g0151700 29.2.2.3.4 protein.synthesis.ribosome... 0.11 Gene family
MA_10436238g0010 No alias 29.2.2.3.4 protein.synthesis.ribosome... 0.03 Gene family
Smo99969 PACid_15420450 29.2.2.3.4 protein.synthesis.ribosome... 0.04 Gene family
Solyc10g039190.2.1 Solyc10g039190.2 29.2.2.3.4 protein.synthesis.ribosome... 0.12 Gene family
Zm00001d027706 No alias 29.2.2.3.4 protein.synthesis.ribosome... 0.12 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 836 937
IPR001680 WD40_repeat 427 459
IPR001680 WD40_repeat 646 683
IPR001680 WD40_repeat 512 541
IPR001680 WD40_repeat 74 99
IPR001680 WD40_repeat 148 183
IPR001680 WD40_repeat 689 724
IPR001680 WD40_repeat 104 141
IPR001680 WD40_repeat 189 223
IPR001680 WD40_repeat 607 640
No external refs found!