Solyc11g005220.2.1


Description : small subunit sigma of AP-1 trans-Golgi network cargo adaptor complex


Gene families : OG_01_0000560 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000560_tree ,
OG_02_0005346 (LandPlants) Phylogenetic Tree(s): OG_02_0005346_tree ,
OG_03_0005940 (SeedPlants) Phylogenetic Tree(s): OG_03_0005940_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005220.2.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00025420 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
AMTR_s00079p00186170 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 Archaeplastida
AT1G47830 No alias SNARE-like superfamily protein 0.04 Archaeplastida
AT4G35410 No alias Clathrin adaptor complex small chain family protein 0.05 Archaeplastida
Cpa|evm.model.tig00001003.32 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
Cpa|evm.model.tig00020780.8 No alias AP-2 complex subunit sigma OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00021127.177 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
Cre07.g324600 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 Archaeplastida
Cre07.g330950 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 Archaeplastida
Cre09.g394100 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 Archaeplastida
GSVIVT01009900001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 Archaeplastida
GSVIVT01013725001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 Archaeplastida
GSVIVT01018785001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 Archaeplastida
GSVIVT01028912001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 Archaeplastida
Gb_05592 No alias small subunit sigma of AP-2 cargo adaptor complex 0.03 Archaeplastida
Gb_30890 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 Archaeplastida
LOC_Os03g57040.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 Archaeplastida
LOC_Os12g10560.1 No alias small subunit sigma of AP-2 cargo adaptor complex 0.14 Archaeplastida
MA_130401g0010 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.07 Archaeplastida
MA_9040447g0010 No alias AP-4 complex subunit sigma OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp1g19570.1 No alias small subunit sigma of AP-2 cargo adaptor complex 0.02 Archaeplastida
Mp1g27490.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.07 Archaeplastida
Pp3c14_14670V3.1 No alias SNARE-like superfamily protein 0.04 Archaeplastida
Pp3c26_15020V3.1 No alias associated protein 19 0.03 Archaeplastida
Pp3c4_27730V3.1 No alias associated protein 19 0.05 Archaeplastida
Pp3c9_6760V3.1 No alias SNARE-like superfamily protein 0.05 Archaeplastida
Smo113878 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.04 Archaeplastida
Zm00001e005895_P003 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.1 Archaeplastida
Zm00001e018362_P003 No alias small subunit sigma of AP-2 cargo adaptor complex 0.03 Archaeplastida
Zm00001e022339_P001 No alias small subunit sigma of AP-4 vacuole cargo adaptor complex 0.06 Archaeplastida
AMTR_s00079p00186170 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 LandPlants
AT4G35410 No alias Clathrin adaptor complex small chain family protein 0.05 LandPlants
GSVIVT01013725001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 LandPlants
GSVIVT01028912001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 LandPlants
Gb_30890 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 LandPlants
LOC_Os03g57040.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 LandPlants
MA_130401g0010 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.05 LandPlants
Mp1g27490.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.05 LandPlants
Pp3c26_15020V3.1 No alias associated protein 19 0.03 LandPlants
Pp3c4_27730V3.1 No alias associated protein 19 0.07 LandPlants
AT4G35410 No alias Clathrin adaptor complex small chain family protein 0.03 SeedPlants
GSVIVT01013725001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 SeedPlants
GSVIVT01028912001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 SeedPlants
Gb_30890 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 SeedPlants
LOC_Os03g57040.1 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 SeedPlants
MA_130401g0010 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 140
No external refs found!