Solyc10g085790.2.1

Description : DBP5/LOS4 ATP-dependent helicase

Gene families : OG_01_0002890 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002890_tree ,
OG_02_0002756 (LandPlants) Phylogenetic Tree(s): OG_02_0002756_tree ,
OG_03_0003041 (SeedPlants) Phylogenetic Tree(s): OG_03_0003041_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g085790.2.1
Cluster	HCCA: Cluster_288

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000203.32	No alias	RNA processing.messenger ribonucleoprotein particle...	0.01	Archaeplastida
Cre06.g306850	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	Archaeplastida
LOC_Os03g06220.1	No alias	DBP5/LOS4 ATP-dependent helicase	0.03	Archaeplastida
MA_932318g0010	No alias	ligand-gated cation channel (GLR)	0.01	Archaeplastida
Mp6g02580.1	No alias	DBP5/LOS4 ATP-dependent helicase	0.02	Archaeplastida
Smo160867	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	Archaeplastida
Smo447130	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	Archaeplastida
Zm00001e000442_P003	No alias	DBP5/LOS4 ATP-dependent helicase	0.05	Archaeplastida
LOC_Os03g06220.1	No alias	DBP5/LOS4 ATP-dependent helicase	0.03	LandPlants
Mp6g02580.1	No alias	DBP5/LOS4 ATP-dependent helicase	0.02	LandPlants
Smo160867	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	LandPlants
Smo447130	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	LandPlants
Zm00001e000442_P003	No alias	DBP5/LOS4 ATP-dependent helicase	0.05	LandPlants
LOC_Os03g06220.1	No alias	DBP5/LOS4 ATP-dependent helicase	0.01	SeedPlants
Zm00001e000442_P003	No alias	DBP5/LOS4 ATP-dependent helicase	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	125	297
IPR001650	Helicase_C	347	457

External Links

No external refs found!