Solyc10g081880.3.1


Description : Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana (sp|q9lsl9|pp445_arath : 858.0)


Gene families : OG_01_0003504 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003504_tree ,
OG_02_0002667 (LandPlants) Phylogenetic Tree(s): OG_02_0002667_tree ,
OG_03_0001694 (SeedPlants) Phylogenetic Tree(s): OG_03_0001694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g081880.3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00165480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g07290,... 0.03 Archaeplastida
AMTR_s00002p00251730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.07 Archaeplastida
AMTR_s00055p00197790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01005921001 No alias Pentatricopeptide repeat-containing protein At3g07290,... 0.02 Archaeplastida
GSVIVT01030055001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.07 Archaeplastida
GSVIVT01038280001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.07 Archaeplastida
Gb_23231 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.08 Archaeplastida
LOC_Os06g47570.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 Archaeplastida
LOC_Os08g20610.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
MA_565112g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9353022g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
Smo62267 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.02 Archaeplastida
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Zm00001e020910_P002 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 Archaeplastida
AMTR_s00001p00165480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g07290,... 0.03 LandPlants
AMTR_s00002p00251730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.05 LandPlants
AMTR_s00055p00197790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.03 LandPlants
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 LandPlants
GSVIVT01005921001 No alias Pentatricopeptide repeat-containing protein At3g07290,... 0.02 LandPlants
GSVIVT01030055001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.07 LandPlants
GSVIVT01038280001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 LandPlants
Gb_23231 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 LandPlants
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 LandPlants
LOC_Os06g47570.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 LandPlants
LOC_Os08g20610.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 LandPlants
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 LandPlants
MA_565112g0010 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 LandPlants
Zm00001e020910_P002 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 LandPlants
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 LandPlants
AMTR_s00002p00251730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.04 SeedPlants
AMTR_s00055p00197790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.02 SeedPlants
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 SeedPlants
GSVIVT01030055001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 SeedPlants
GSVIVT01038280001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 SeedPlants
Gb_23231 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 SeedPlants
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 SeedPlants
LOC_Os06g47570.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 SeedPlants
LOC_Os08g20610.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 SeedPlants
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 SeedPlants
MA_565112g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_9353022g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 SeedPlants
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.01 SeedPlants
Zm00001e020910_P002 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 SeedPlants
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 667 713
IPR002885 Pentatricopeptide_repeat 386 434
IPR002885 Pentatricopeptide_repeat 459 504
IPR002885 Pentatricopeptide_repeat 281 330
IPR002885 Pentatricopeptide_repeat 527 575
IPR002885 Pentatricopeptide_repeat 243 275
IPR002885 Pentatricopeptide_repeat 208 233
IPR002885 Pentatricopeptide_repeat 347 380
IPR002885 Pentatricopeptide_repeat 181 207
IPR002885 Pentatricopeptide_repeat 635 664
IPR002885 Pentatricopeptide_repeat 600 628
IPR033443 PPR_long 773 901
No external refs found!